Publications
Here you can find our latest publications. We are working on deep learning-based microscopy applications, such as pathology:
2022
Classification of visibility in multi-stain microscopy images Proceedings Article
In: Medical Imaging with Deep Learning 2022, Zurich, 2022.
Superpixel Pre-segmentation of HER2 Slides for Efficient Annotation Book Section
In: Maier-Hein, Klaus; Deserno, Thomas M.; Handels, Heinz; Maier, Andreas; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2022, pp. 254–259, Springer Fachmedien Wiesbaden, Wiesbaden, 2022, ISBN: 978-3-658-36931-6 978-3-658-36932-3, (Series Title: Informatik aktuell).
Domain Adversarial RetinaNet as a Reference Algorithm for the MItosis DOmain Generalization Challenge Book Section
In: Aubreville, Marc; Zimmerer, David; Heinrich, Mattias (Ed.): Biomedical Image Registration, Domain Generalisation and Out-of-Distribution Analysis, vol. 13166, pp. 5–13, Springer International Publishing, Cham, 2022, ISBN: 978-3-030-97280-6 978-3-030-97281-3, (Series Title: Lecture Notes in Computer Science).
2021
Intraoperative free margins assessment of oropharyngeal squamous cell carcinoma with confocal laser endomicroscopy: a pilot study Journal Article
In: European Archives of Oto-Rhino-Laryngology, vol. 278, no. 11, pp. 4433–4439, 2021, ISSN: 0937-4477, 1434-4726.
Iterative Cross-Scanner Registration for Whole Slide Images Proceedings Article
In: 2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), pp. 582–590, IEEE, Montreal, BC, Canada, 2021, ISBN: 978-1-66540-191-3.
International Guidelines for Veterinary Tumor Pathology: A Call to Action Journal Article
In: Veterinary Pathology, vol. 58, no. 5, pp. 766–794, 2021, ISSN: 0300-9858, 1544-2217.
Feasibility of intraoperative assessment of safe surgical margins during laryngectomy with confocal laser endomicroscopy: A pilot study Journal Article
In: Auris Nasus Larynx, vol. 48, no. 4, pp. 764–769, 2021, ISSN: 03858146.
Mitotic Figures—Normal, Atypical, and Imposters: A Guide to Identification Journal Article
In: Veterinary Pathology, vol. 58, no. 2, pp. 243–257, 2021, ISSN: 0300-9858, 1544-2217.
EXACT: a collaboration toolset for algorithm-aided annotation of images with annotation version control Journal Article
In: Scientific Reports, vol. 11, no. 1, pp. 4343, 2021, ISSN: 2045-2322.
Automatic and explainable grading of meningiomas from histopathology images Proceedings Article
In: pp. 69–80, PMLR, 2021, ISBN: 2640-3498.
Robust quad-tree based registration on whole slide images Proceedings Article
In: pp. 181–190, PMLR, 2021, ISBN: 2640-3498.
Influence of Inter-Annotator Variability on Automatic Mitotic Figure Assessment Book Section
In: Palm, Christoph; Deserno, Thomas M.; Handels, Heinz; Maier, Andreas; Maier-Hein, Klaus; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2021, pp. 241–246, Springer Fachmedien Wiesbaden, Wiesbaden, 2021, ISBN: 978-3-658-33197-9 978-3-658-33198-6, (Series Title: Informatik aktuell).
Cell Detection for Asthma on Partially Annotated Whole Slide Images: Learning to be EXACT Book Section
In: Palm, Christoph; Deserno, Thomas M.; Handels, Heinz; Maier, Andreas; Maier-Hein, Klaus; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2021, pp. 147–152, Springer Fachmedien Wiesbaden, Wiesbaden, 2021, ISBN: 978-3-658-33197-9 978-3-658-33198-6, (Series Title: Informatik aktuell).
Dataset on Bi- and Multi-nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors Book Section
In: Palm, Christoph; Deserno, Thomas M.; Handels, Heinz; Maier, Andreas; Maier-Hein, Klaus; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2021, pp. 134–139, Springer Fachmedien Wiesbaden, Wiesbaden, 2021, ISBN: 978-3-658-33197-9 978-3-658-33198-6, (Series Title: Informatik aktuell).
2020
A completely annotated whole slide image dataset of canine breast cancer to aid human breast cancer research Journal Article
In: Scientific Data, vol. 7, no. 1, pp. 417, 2020, ISSN: 2052-4463.
Deep learning algorithms out-perform veterinary pathologists in detecting the mitotically most active tumor region Journal Article
In: Scientific Reports, vol. 10, no. 1, pp. 16447, 2020, ISSN: 2045-2322.
Deep Learning-Based Quantification of Pulmonary Hemosiderophages in Cytology Slides Journal Article
In: Scientific Reports, vol. 10, no. 1, pp. 9795, 2020, ISSN: 2045-2322.
Computer-Aided Tumor Diagnosis of Microscopy Images PhD Thesis
Friedrich-Alexander-Universität Erlangen-Nürnberg, 2020.
CLCNET: Deep Learning-Based Noise Reduction for Hearing aids using Complex Linear Coding Proceedings Article
In: ICASSP 2020 – 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pp. 6949–6953, IEEE, Barcelona, Spain, 2020, ISBN: 978-1-5090-6631-5.
Computerized Calculation of Mitotic Count Distribution in Canine Cutaneous Mast Cell Tumor Sections: Mitotic Count Is Area Dependent Journal Article
In: Veterinary Pathology, vol. 57, no. 2, pp. 214–226, 2020, ISSN: 0300-9858, 1544-2217.
Move Over There: One-Click Deformation Correction for Image Fusion During Endovascular Aortic Repair Book Section
In: Martel, Anne L.; Abolmaesumi, Purang; Stoyanov, Danail; Mateus, Diana; Zuluaga, Maria A.; Zhou, S. Kevin; Racoceanu, Daniel; Joskowicz, Leo (Ed.): Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, vol. 12264, pp. 713–723, Springer International Publishing, Cham, 2020, ISBN: 978-3-030-59718-4 978-3-030-59719-1, (Series Title: Lecture Notes in Computer Science).
Are Fast Labeling Methods Reliable? A Case Study of Computer-Aided Expert Annotations on Microscopy Slides Book Section
In: Martel, Anne L.; Abolmaesumi, Purang; Stoyanov, Danail; Mateus, Diana; Zuluaga, Maria A.; Zhou, S. Kevin; Racoceanu, Daniel; Joskowicz, Leo (Ed.): Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, vol. 12261, pp. 24–32, Springer International Publishing, Cham, 2020, ISBN: 978-3-030-59709-2 978-3-030-59710-8, (Series Title: Lecture Notes in Computer Science).
Is Crowd-Algorithm Collaboration an Advanced Alternative to Crowd-Sourcing on Cytology Slides? Book Section
In: Tolxdorff, Thomas; Deserno, Thomas M.; Handels, Heinz; Maier, Andreas; Maier-Hein, Klaus H.; Palm, Christoph (Ed.): Bildverarbeitung für die Medizin 2020, pp. 26–31, Springer Fachmedien Wiesbaden, Wiesbaden, 2020, ISBN: 978-3-658-29266-9 978-3-658-29267-6, (Series Title: Informatik aktuell).
In: Cardoso, Jaime; Nguyen, Hien Van; Heller, Nicholas; Abreu, Pedro Henriques; Isgum, Ivana; Silva, Wilson; Cruz, Ricardo; Amorim, Jose Pereira; Patel, Vishal; Roysam, Badri; Zhou, Kevin; Jiang, Steve; Le, Ngan; Luu, Khoa; Sznitman, Raphael; Cheplygina, Veronika; Mateus, Diana; Trucco, Emanuele; Abbasi, Samaneh (Ed.): Interpretable and Annotation-Efficient Learning for Medical Image Computing, vol. 12446, pp. 204–213, Springer International Publishing, Cham, 2020, ISBN: 978-3-030-61165-1 978-3-030-61166-8, (Series Title: Lecture Notes in Computer Science).
Mitotic Count in Canine Cutaneous Mast Cell Tumours – Not Accurate but Reproducible Journal Article
In: Journal of Comparative Pathology, vol. 174, pp. 143, 2020, ISSN: 00219975.
Inter-Species, Inter-Tissue Domain Adaptation for Mitotic Figure Assessment: Learning New Tricks from Old Dogs Book Section
In: Tolxdorff, Thomas; Deserno, Thomas M.; Handels, Heinz; Maier, Andreas; Maier-Hein, Klaus H.; Palm, Christoph (Ed.): Bildverarbeitung für die Medizin 2020, pp. 1–7, Springer Fachmedien Wiesbaden, Wiesbaden, 2020, ISBN: 978-3-658-29266-9 978-3-658-29267-6, (Series Title: Informatik aktuell).
2019
Probe-based confocal laser endomicroscopy in detecting malignant lesions of vocal folds Journal Article
In: Acta Otorhinolaryngologica Italica, vol. 39, no. 6, pp. 389–395, 2019, ISSN: 1827-675X.
Simultaneous reconstruction of multiple stiff wires from a single X-ray projection for endovascular aortic repair Journal Article
In: International Journal of Computer Assisted Radiology and Surgery, vol. 14, no. 11, pp. 1891–1899, 2019, ISSN: 1861-6410, 1861-6429.
A large-scale dataset for mitotic figure assessment on whole slide images of canine cutaneous mast cell tumor Journal Article
In: Scientific Data, vol. 6, no. 1, pp. 274, 2019, ISSN: 2052-4463.
In: Gupta, Anubha; Gupta, Ritu (Ed.): ISBI 2019 C-NMC Challenge: Classification in Cancer Cell Imaging, pp. 13–22, Springer Singapore, Singapore, 2019, ISBN: 9789811507977 9789811507984, (Series Title: Lecture Notes in Bioengineering).
Deep learning-based detection of motion artifacts in probe-based confocal laser endomicroscopy images Journal Article
In: International Journal of Computer Assisted Radiology and Surgery, vol. 14, no. 1, pp. 31–42, 2019, ISSN: 1861-6410, 1861-6429.
In: Cliquet, Alberto; Wiebe, Sheldon; Anderson, Paul; Saggio, Giovanni; Zwiggelaar, Reyer; Gamboa, Hugo; Fred, Ana; Badia, Sergi Bermúdez I (Ed.): Biomedical Engineering Systems and Technologies, vol. 1024, pp. 67–85, Springer International Publishing, Cham, 2019, ISBN: 978-3-030-29195-2 978-3-030-29196-9, (Series Title: Communications in Computer and Information Science).
Augmented Mitotic Cell Count Using Field of Interest Proposal Book Section
In: Handels, Heinz; Deserno, Thomas M.; Maier, Andreas; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2019, pp. 321–326, Springer Fachmedien Wiesbaden, Wiesbaden, 2019, ISBN: 978-3-658-25325-7 978-3-658-25326-4, (Series Title: Informatik aktuell).
Field of Interest Proposal for Augmented Mitotic Cell Count: Comparison of Two Convolutional Networks: Proceedings Article
In: Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies, pp. 30–37, SCITEPRESS – Science and Technology Publications, Prague, Czech Republic, 2019, ISBN: 978-989-758-353-7.
2018
Deep Denoising for Hearing Aid Applications Proceedings Article
In: 2018 16th International Workshop on Acoustic Signal Enhancement (IWAENC), pp. 361–365, IEEE, Tokyo, 2018, ISBN: 978-1-5386-8151-0.
Intraoperative stent segmentation in X-ray fluoroscopy for endovascular aortic repair Journal Article
In: International Journal of Computer Assisted Radiology and Surgery, vol. 13, no. 8, pp. 1221–1231, 2018, ISSN: 1861-6410, 1861-6429.
Multiple Device Segmentation for Fluoroscopic Imaging Using Multi-task Learning Book Section
In: Stoyanov, Danail; Taylor, Zeike; Balocco, Simone; Sznitman, Raphael; Martel, Anne; Maier-Hein, Lena; Duong, Luc; Zahnd, Guillaume; Demirci, Stefanie; Albarqouni, Shadi; Lee, Su-Lin; Moriconi, Stefano; Cheplygina, Veronika; Mateus, Diana; Trucco, Emanuele; Granger, Eric; Jannin, Pierre (Ed.): Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, vol. 11043, pp. 19–27, Springer International Publishing, Cham, 2018, ISBN: 978-3-030-01363-9 978-3-030-01364-6, (Series Title: Lecture Notes in Computer Science).
Frangi-Net Book Section
In: Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2018, pp. 341–346, Springer Berlin Heidelberg, Berlin, Heidelberg, 2018, ISBN: 978-3-662-56536-0 978-3-662-56537-7, (Series Title: Informatik aktuell).
Motion Artifact Detection in Confocal Laser Endomicroscopy Images Book Section
In: Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2018, pp. 328–333, Springer Berlin Heidelberg, Berlin, Heidelberg, 2018, ISBN: 978-3-662-56536-0 978-3-662-56537-7, (Series Title: Informatik aktuell).
Classification of Polyethylene Particles and the Local CD3+ Lymphocytosis in Histological Slices Book Section
In: Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2018, pp. 228–233, Springer Berlin Heidelberg, Berlin, Heidelberg, 2018, ISBN: 978-3-662-56536-0 978-3-662-56537-7, (Series Title: Informatik aktuell).
Microscopy Book Section
In: Maier, Andreas; Steidl, Stefan; Christlein, Vincent; Hornegger, Joachim (Ed.): Medical Imaging Systems, vol. 11111, pp. 69–90, Springer International Publishing, Cham, 2018, ISBN: 978-3-319-96519-2 978-3-319-96520-8, (Series Title: Lecture Notes in Computer Science).
Classification of Mitotic Cells: Potentials Beyond the Limits of Small Data Sets Book Section
In: Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2018, pp. 245–250, Springer Berlin Heidelberg, Berlin, Heidelberg, 2018, ISBN: 978-3-662-56536-0 978-3-662-56537-7, (Series Title: Informatik aktuell).
2017
Automatic Classification of Cancerous Tissue in Laserendomicroscopy Images of the Oral Cavity using Deep Learning Journal Article
In: Scientific Reports, vol. 7, no. 1, pp. 11979, 2017, ISSN: 2045-2322.
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