Publications

Here you can find our latest publications. We are working on deep learning-based microscopy applications, such as pathology:

126 entries « 3 of 3 »

2020

26.

Marzahl, Christian; Bertram, Christof A.; Aubreville, Marc; Petrick, Anne; Weiler, Kristina; Gläsel, Agnes C.; Fragoso, Marco; Merz, Sophie; Bartenschlager, Florian; Hoppe, Judith; Langenhagen, Alina; Jasensky, Anne-Katherine; Voigt, Jörn; Klopfleisch, Robert; Maier, Andreas

Are Fast Labeling Methods Reliable? A Case Study of Computer-Aided Expert Annotations on Microscopy Slides Book Section

In: Martel, Anne L.; Abolmaesumi, Purang; Stoyanov, Danail; Mateus, Diana; Zuluaga, Maria A.; Zhou, S. Kevin; Racoceanu, Daniel; Joskowicz, Leo (Ed.): Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, vol. 12261, pp. 24–32, Springer International Publishing, Cham, 2020, ISBN: 978-3-030-59709-2 978-3-030-59710-8, (Series Title: Lecture Notes in Computer Science).

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25.

Marzahl, Christian; Aubreville, Marc; Bertram, Christof A.; Gerlach, Stefan; Maier, Jennifer; Voigt, Jörn; Hill, Jenny; Klopfleisch, Robert; Maier, Andreas

Is Crowd-Algorithm Collaboration an Advanced Alternative to Crowd-Sourcing on Cytology Slides? Book Section

In: Tolxdorff, Thomas; Deserno, Thomas M.; Handels, Heinz; Maier, Andreas; Maier-Hein, Klaus H.; Palm, Christoph (Ed.): Bildverarbeitung für die Medizin 2020, pp. 26–31, Springer Fachmedien Wiesbaden, Wiesbaden, 2020, ISBN: 978-3-658-29266-9 978-3-658-29267-6, (Series Title: Informatik aktuell).

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24.

Bertram, Christof A.; Veta, Mitko; Marzahl, Christian; Stathonikos, Nikolas; Maier, Andreas; Klopfleisch, Robert; Aubreville, Marc

Are Pathologist-Defined Labels Reproducible? Comparison of the TUPAC16 Mitotic Figure Dataset with an Alternative Set of Labels Book Section

In: Cardoso, Jaime; Nguyen, Hien Van; Heller, Nicholas; Abreu, Pedro Henriques; Isgum, Ivana; Silva, Wilson; Cruz, Ricardo; Amorim, Jose Pereira; Patel, Vishal; Roysam, Badri; Zhou, Kevin; Jiang, Steve; Le, Ngan; Luu, Khoa; Sznitman, Raphael; Cheplygina, Veronika; Mateus, Diana; Trucco, Emanuele; Abbasi, Samaneh (Ed.): Interpretable and Annotation-Efficient Learning for Medical Image Computing, vol. 12446, pp. 204–213, Springer International Publishing, Cham, 2020, ISBN: 978-3-030-61165-1 978-3-030-61166-8, (Series Title: Lecture Notes in Computer Science).

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23.

Bertram, Christof A.; Aubreville, Marc; Gurtner, Corinna; Bartel, Alexander; Corner, S. M.; Dettwiler, M.; Kershaw, O.; Noland, E. L.; Schmidt, A.; Sledge, D. G.; Smedley, R. C.; Thaiwong, T.; Kiupel, Matti; Maier, A.; Klopfleisch, Robert

Mitotic Count in Canine Cutaneous Mast Cell Tumours – Not Accurate but Reproducible Journal Article

In: Journal of Comparative Pathology, vol. 174, pp. 143, 2020, ISSN: 00219975.

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22.

Aubreville, Marc; Bertram, Christof A.; Jabari, Samir; Marzahl, Christian; Klopfleisch, Robert; Maier, Andreas

Inter-Species, Inter-Tissue Domain Adaptation for Mitotic Figure Assessment: Learning New Tricks from Old Dogs Book Section

In: Tolxdorff, Thomas; Deserno, Thomas M.; Handels, Heinz; Maier, Andreas; Maier-Hein, Klaus H.; Palm, Christoph (Ed.): Bildverarbeitung für die Medizin 2020, pp. 1–7, Springer Fachmedien Wiesbaden, Wiesbaden, 2020, ISBN: 978-3-658-29266-9 978-3-658-29267-6, (Series Title: Informatik aktuell).

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2019

21.

Goncalves, Miguel; Aubreville, Marc; Mueller, Sarina K; Sievert, Matti; Maier, Andreas; Iro, Heinrich; Bohr, Christopher

Probe-based confocal laser endomicroscopy in detecting malignant lesions of vocal folds Journal Article

In: Acta Otorhinolaryngologica Italica, vol. 39, no. 6, pp. 389–395, 2019, ISSN: 1827-675X.

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20.

Breininger, Katharina; Hanika, Moritz; Weule, Mareike; Kowarschik, Markus; Pfister, Marcus; Maier, Andreas

Simultaneous reconstruction of multiple stiff wires from a single X-ray projection for endovascular aortic repair Journal Article

In: International Journal of Computer Assisted Radiology and Surgery, vol. 14, no. 11, pp. 1891–1899, 2019, ISSN: 1861-6410, 1861-6429.

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19.

Bertram, Christof A.; Aubreville, Marc; Marzahl, Christian; Maier, Andreas; Klopfleisch, Robert

A large-scale dataset for mitotic figure assessment on whole slide images of canine cutaneous mast cell tumor Journal Article

In: Scientific Data, vol. 6, no. 1, pp. 274, 2019, ISSN: 2052-4463.

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18.

Marzahl, Christian; Aubreville, Marc; Voigt, Jörn; Maier, Andreas

Classification of Leukemic B-Lymphoblast Cells from Blood Smear Microscopic Images with an Attention-Based Deep Learning Method and Advanced Augmentation Techniques Book Section

In: Gupta, Anubha; Gupta, Ritu (Ed.): ISBI 2019 C-NMC Challenge: Classification in Cancer Cell Imaging, pp. 13–22, Springer Singapore, Singapore, 2019, ISBN: 978-981-15-0797-7 978-981-15-0798-4, (Series Title: Lecture Notes in Bioengineering).

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17.

Aubreville, Marc; Stoeve, Maike; Oetter, Nicolai; Goncalves, Miguel; Knipfer, Christian; Neumann, Helmut; Bohr, Christopher; Stelzle, Florian; Maier, Andreas

Deep learning-based detection of motion artifacts in probe-based confocal laser endomicroscopy images Journal Article

In: International Journal of Computer Assisted Radiology and Surgery, vol. 14, no. 1, pp. 31–42, 2019, ISSN: 1861-6410, 1861-6429.

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16.

Aubreville, Marc; Goncalves, Miguel; Knipfer, Christian; Oetter, Nicolai; Würfl, Tobias; Neumann, Helmut; Stelzle, Florian; Bohr, Christopher; Maier, Andreas

Transferability of Deep Learning Algorithms for Malignancy Detection in Confocal Laser Endomicroscopy Images from Different Anatomical Locations of the Upper Gastrointestinal Tract Book Section

In: Cliquet, Alberto; Wiebe, Sheldon; Anderson, Paul; Saggio, Giovanni; Zwiggelaar, Reyer; Gamboa, Hugo; Fred, Ana; Badia, Sergi Bermúdez I (Ed.): Biomedical Engineering Systems and Technologies, vol. 1024, pp. 67–85, Springer International Publishing, Cham, 2019, ISBN: 978-3-030-29195-2 978-3-030-29196-9, (Series Title: Communications in Computer and Information Science).

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15.

Aubreville, Marc; Bertram, Christof A.; Klopfleisch, Robert; Maier, Andreas

Augmented Mitotic Cell Count Using Field of Interest Proposal Book Section

In: Handels, Heinz; Deserno, Thomas M.; Maier, Andreas; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2019, pp. 321–326, Springer Fachmedien Wiesbaden, Wiesbaden, 2019, ISBN: 978-3-658-25325-7 978-3-658-25326-4, (Series Title: Informatik aktuell).

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14.

Aubreville, Marc; Bertram, Christof; Klopfleisch, Robert; Maier, Andreas

Field of Interest Proposal for Augmented Mitotic Cell Count: Comparison of Two Convolutional Networks: Proceedings Article

In: Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies, pp. 30–37, SCITEPRESS – Science and Technology Publications, Prague, Czech Republic, 2019, ISBN: 978-989-758-353-7.

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2018

13.

Aubreville, Marc; Ehrensperger, Kai; Maier, Andreas; Rosenkranz, Tobias; Graf, Benjamin; Puder, Henning

Deep Denoising for Hearing Aid Applications Proceedings Article

In: 2018 16th International Workshop on Acoustic Signal Enhancement (IWAENC), pp. 361–365, IEEE, Tokyo, 2018, ISBN: 978-1-5386-8151-0.

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12.

Breininger, Katharina; Albarqouni, Shadi; Kurzendorfer, Tanja; Pfister, Marcus; Kowarschik, Markus; Maier, Andreas

Intraoperative stent segmentation in X-ray fluoroscopy for endovascular aortic repair Journal Article

In: International Journal of Computer Assisted Radiology and Surgery, vol. 13, no. 8, pp. 1221–1231, 2018, ISSN: 1861-6410, 1861-6429.

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11.

Breininger, Katharina; Würfl, Tobias; Kurzendorfer, Tanja; Albarqouni, Shadi; Pfister, Marcus; Kowarschik, Markus; Navab, Nassir; Maier, Andreas

Multiple Device Segmentation for Fluoroscopic Imaging Using Multi-task Learning Book Section

In: Stoyanov, Danail; Taylor, Zeike; Balocco, Simone; Sznitman, Raphael; Martel, Anne; Maier-Hein, Lena; Duong, Luc; Zahnd, Guillaume; Demirci, Stefanie; Albarqouni, Shadi; Lee, Su-Lin; Moriconi, Stefano; Cheplygina, Veronika; Mateus, Diana; Trucco, Emanuele; Granger, Eric; Jannin, Pierre (Ed.): Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis, vol. 11043, pp. 19–27, Springer International Publishing, Cham, 2018, ISBN: 978-3-030-01363-9 978-3-030-01364-6, (Series Title: Lecture Notes in Computer Science).

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10.

Fu, Weilin; Breininger, Katharina; Schaffert, Roman; Ravikumar, Nishant; Würfl, Tobias; Fujimoto, Jim; Moult, Eric; Maier, Andreas

Frangi-Net Book Section

In: Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2018, pp. 341–346, Springer Berlin Heidelberg, Berlin, Heidelberg, 2018, ISBN: 978-3-662-56536-0 978-3-662-56537-7, (Series Title: Informatik aktuell).

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9.

Stoeve, Maike; Aubreville, Marc; Oetter, Nicolai; Knipfer, Christian; Neumann, Helmut; Stelzle, Florian; Maier, Andreas

Motion Artifact Detection in Confocal Laser Endomicroscopy Images Book Section

In: Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2018, pp. 328–333, Springer Berlin Heidelberg, Berlin, Heidelberg, 2018, ISBN: 978-3-662-56536-0 978-3-662-56537-7, (Series Title: Informatik aktuell).

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8.

Steffes, Lara-Maria; Aubreville, Marc; Sesselmann, Stefan; Krenn, Veit; Maier, Andreas

Classification of Polyethylene Particles and the Local CD3+ Lymphocytosis in Histological Slices Book Section

In: Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2018, pp. 228–233, Springer Berlin Heidelberg, Berlin, Heidelberg, 2018, ISBN: 978-3-662-56536-0 978-3-662-56537-7, (Series Title: Informatik aktuell).

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7.

Mualla, Firas; Aubreville, Marc; Maier, Andreas

Microscopy Book Section

In: Maier, Andreas; Steidl, Stefan; Christlein, Vincent; Hornegger, Joachim (Ed.): Medical Imaging Systems, vol. 11111, pp. 69–90, Springer International Publishing, Cham, 2018, ISBN: 978-3-319-96519-2 978-3-319-96520-8, (Series Title: Lecture Notes in Computer Science).

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6.

Krappmann, Maximilian; Aubreville, Marc; Maier, Andereas; Bertram, Christof; Klopfleisch, Robert

Classification of Mitotic Cells: Potentials Beyond the Limits of Small Data Sets Book Section

In: Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2018, pp. 245–250, Springer Berlin Heidelberg, Berlin, Heidelberg, 2018, ISBN: 978-3-662-56536-0 978-3-662-56537-7, (Series Title: Informatik aktuell).

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5.

Aubreville, Marc; Bertram, Christof; Klopfleisch, Robert; Maier, Andreas

SlideRunner: A Tool for Massive Cell Annotations in Whole Slide Images Book Section

In: Maier, Andreas; Deserno, Thomas M.; Handels, Heinz; Maier-Hein, Klaus Hermann; Palm, Christoph; Tolxdorff, Thomas (Ed.): Bildverarbeitung für die Medizin 2018, pp. 309–314, Springer Berlin Heidelberg, Berlin, Heidelberg, 2018, ISBN: 978-3-662-56536-0 978-3-662-56537-7, (Series Title: Informatik aktuell).

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4.

Aubreville, Marc; Goncalves, Miguel; Knipfer, Christian; Oetter, Nicolai; Würfl, Tobias; Neumann, Helmut; Stelzle, Florian; Bohr, Christopher; Maier, Andreas

Patch-based Carcinoma Detection on Confocal Laser Endomicroscopy Images – A Cross-site Robustness Assessment: Proceedings Article

In: Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies, pp. 27–34, SCITEPRESS – Science and Technology Publications, Funchal, Madeira, Portugal, 2018, ISBN: 978-989-758-307-0.

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2017

3.

Aubreville, Marc; Knipfer, Christian; Oetter, Nicolai; Jaremenko, Christian; Rodner, Erik; Denzler, Joachim; Bohr, Christopher; Neumann, Helmut; Stelzle, Florian; Maier, Andreas

Automatic Classification of Cancerous Tissue in Laserendomicroscopy Images of the Oral Cavity using Deep Learning Journal Article

In: Scientific Reports, vol. 7, no. 1, pp. 11979, 2017, ISSN: 2045-2322.

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2.

Aubreville, Marc; Krappmann, Maximilian; Bertram, Christof; Klopfleisch, Robert; Maier, Andreas

A Guided Spatial Transformer Network for Histology Cell Differentiation Miscellaneous

2017, (Artwork Size: 5 pages ISBN: 9783038680369 ISSN: 2070-5786 Pages: 5 pages Publication Title: Eurographics Workshop on Visual Computing for Biology and Medicine).

Abstract | Links | BibTeX | Tags: Applied computing, Bioinformatics, Computing methodologies, FOS: Computer and information sciences, Neural networks, Object detection

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126 entries « 3 of 3 »