Jonas Ammeling

Jonas Ammeling

Researcher

TH Ingolstadt

I am a research assistant and PhD student at the Technical University of Applied Sciences Ingolstadt. I received my Master’s degree in Statistics & Data Science from Leiden University in the Netherlands. My current work focuses on the development of deep learning applications in digital pathology and radiology. I am particularly interested in object detection methods, self-supervised learning, more user-centric approaches, and multimodal vision-language processing.

Publications

2026

2025

2024

  • An Interdisciplinary Perspective on AI-Supported Decision Making in Medicine

    Jonas Ammeling, Marc Aubreville, Alexis Fritz, Angelika Kießig, Sebastian Krügel and Matthias Uhl

    Technology in Society doi link

  • Assessment of Scanner Domain Shifts in Deep Multiple Instance Learning

    Jonathan Ganz, Chloé Puget, Jonas Ammeling, Eda Parlak, Matti Kiupel, Christof A. Bertram, Katharina Breininger, Robert Klopfleisch and Marc Aubreville

    Bildverarbeitung für die Medizin 2024 doi link

  • Automated Mitotic Index Calculation via Deep Learning and Immunohistochemistry

    Jonas Ammeling, Moritz Hecker, Jonathan Ganz, Taryn A. Donovan, Robert Klopfleisch, Christof A. Bertram, Katharina Breininger and Marc Aubreville

    Bildverarbeitung für die Medizin 2024 doi link

  • Domain generalization across tumor types, laboratories, and species — Insights from the 2022 edition of the Mitosis Domain Generalization Challenge

    Marc Aubreville, Nikolas Stathonikos, Taryn A. Donovan, Robert Klopfleisch, Jonas Ammeling, Jonathan Ganz, Frauke Wilm, Mitko Veta, Samir Jabari, Markus Eckstein, Jonas Annuscheit, Christian Krumnow, Engin Bozaba, Sercan Çayır, Hongyan Gu, Xiang ‘Anthony’ Chen, Mostafa Jahanifar, Adam Shephard, Satoshi Kondo, Satoshi Kasai, Sujatha Kotte, V.G. Saipradeep, Maxime W. Lafarge, Viktor H. Koelzer, Ziyue Wang, Yongbing Zhang, Sen Yang, Xiyue Wang, Katharina Breininger and Christof A. Bertram

    Medical Image Analysis doi link

  • Few Shot Learning for the Classification of Confocal Laser Endomicroscopy Images of Head and Neck Tumors

    Marc Aubreville, Zhaoya Pan, Matti Sievert, Jonas Ammeling, Jonathan Ganz, Nicolai Oetter, Florian Stelzle, Ann-Kathrin Frenken, Katharina Breininger and Miguel Goncalves

    Bildverarbeitung für die Medizin 2024 doi link

  • Few Shot Learning for the Classification of Confocal Laser Endomicroscopy Images of Head and Neck Tumors

    Marc Aubreville, Zhaoya Pan, Matti Sievert, Jonas Ammeling, Jonathan Ganz, Nicolai Oetter, Florian Stelzle, Ann-Kathrin Frenken, Katharina Breininger and Miguel Goncalves

    Bildverarbeitung für die Medizin 2024 doi link

  • Information mismatch in PHH3-assisted mitosis annotation leads to interpretation shifts in H&E slide analysis

    Jonathan Ganz, Christian Marzahl, Jonas Ammeling, Emely Rosbach, Barbara Richter, Chloé Puget, Daniela Denk, Elena A. Demeter, Flaviu A. Tăbăran, Gabriel Wasinger, Karoline Lipnik, Marco Tecilla, Matthew J. Valentine, Michael J. Dark, Niklas Abele, Pompei Bolfa, Ramona Erber, Robert Klopfleisch, Sophie Merz, Taryn A. Donovan, Samir Jabari, Christof A. Bertram, Katharina Breininger and Marc Aubreville

    Scientific Reports doi link

  • Model-based Cleaning of the QUILT-1M Pathology Dataset for Text-Conditional Image Synthesis

    Marc Aubreville, Jonathan Ganz, Jonas Ammeling, Christopher Kaltenecker and Christof A. Bertram

    Medical Imaging with Deep Learning link

  • Perceived responsibility in AI-supported medicine

    Sebastian Krügel, Jonas Ammeling, Marc Aubreville, Alexis Fritz, Angelika Kießig and Matthias Uhl

    AI & SOCIETY doi link

  • Perceived responsibility in AI-supported medicine

    S. Krügel, J. Ammeling, M. Aubreville, A. Fritz, A. Kießig and Matthias Uhl

    AI & SOCIETY doi link

  • Prediction of tumor board procedural recommendations using large language models

    Marc Aubreville, Jonathan Ganz, Jonas Ammeling, Emely Rosbach, Thomas Gehrke, Agmal Scherzad, Stephan Hackenberg and Miguel Goncalves

    European Archives of Oto-Rhino-Laryngology doi link

  • Re-identification from histopathology images

    Jonathan Ganz, Jonas Ammeling, Samir Jabari, Katharina Breininger and Marc Aubreville

    Medical Image Analysis doi link

2023

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