Jonas Ammeling

I am a research assistant and PhD student at the Technical University of Applied Sciences Ingolstadt. I received my Master’s degree in Statistics & Data Science from Leiden University in the Netherlands. My current work focuses on the development of deep learning applications in digital pathology and radiology. I am particularly interested in object detection methods, self-supervised learning, more user-centric approaches, and multimodal vision-language processing.

Publications:

Ammeling, J., Manger, C., Kwaka, E., Krügel, S., Uhl, M., Kießig, A., Fritz, A., Ganz, J., Riener, A., Bertram, C. A., Breininger, K., & Aubreville, M. (2023). Appealing but Potentially Biasing – Investigation of the Visual Representation of Segmentation Predictions by AI Recommender Systems for Medical Decision Making. MuC ’23: Mensch Und Computer 2023, 330–335. https://doi.org/10.1145/3603555.3608561 Cite

Aubreville, M., Wilm, F., Stathonikos, N., Breininger, K., Donovan, T. A., Jabari, S., Veta, M., Ganz, J., Ammeling, J., Van Diest, P. J., Klopfleisch, R., & Bertram, C. A. (2023). A comprehensive multi-domain dataset for mitotic figure detection. Scientific Data, 10(1), 484. https://doi.org/10.1038/s41597-023-02327-4 Cite Download

Ammeling, J., Wilm, F., Ganz, J., Breininger, K., & Aubreville, M. (2023). Reference Algorithms for the Mitosis Domain Generalization (MIDOG) 2022 Challenge. In B. Sheng & M. Aubreville (Eds.), Mitosis Domain Generalization and Diabetic Retinopathy Analysis (Vol. 13597, pp. 201–205). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-33658-4_19 Cite

Ammeling, J., Schmidt, L.-H., Ganz, J., Niedermair, T., Brochhausen-Delius, C., Schulz, C., Breininger, K., & Aubreville, M. (2023). Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays. In T. M. Deserno, H. Handels, A. Maier, K. Maier-Hein, C. Palm, & T. Tolxdorff (Eds.), Bildverarbeitung für die Medizin 2023 (pp. 220–225). Springer Fachmedien Wiesbaden. https://doi.org/10.1007/978-3-658-41657-7_48 Cite Download

Aubreville, M., Ganz, J., Ammeling, J., Donovan, T. A., Fick, R. Hj., Breininger, K., & Bertram, C. A. (2023). Deep Learning-based Subtyping of Atypical and Normal Mitoses using a Hierarchical Anchor-free Object Detector. In T. M. Deserno, H. Handels, A. Maier, K. Maier-Hein, C. Palm, & T. Tolxdorff (Eds.), Bildverarbeitung für die Medizin 2023 (pp. 189–195). Springer Fachmedien Wiesbaden. https://doi.org/10.1007/978-3-658-41657-7_40 Cite Download

Ganz, J., Lipnik, K., Ammeling, J., Richter, B., Puget, C., Parlak, E., Diehl, L., Klopfleisch, R., Donovan, T. A., Kiupel, M., Bertram, C. A., Breininger, K., & Aubreville, M. (2023). Deep Learning-based Automatic Assessment of AgNOR-scores in Histopathology Images. In T. M. Deserno, H. Handels, A. Maier, K. Maier-Hein, C. Palm, & T. Tolxdorff (Eds.), Bildverarbeitung für die Medizin 2023 (pp. 226–231). Springer Fachmedien Wiesbaden. https://doi.org/10.1007/978-3-658-41657-7_49 Cite Download